Wednesday, January 28, 2009

Turns and loops


Turns
  • serve to change the direction of the polypeptide chain, so if chain is going north, then a U-turn will change direction to south
  • involves 4 residues, h-bond between carbonyl of residue i and amide of residue i+3
  • type I is the most common
  • turns are mostly found in the surface, so residues are usually charged and polar
  • type I' and II' are mirror image conformations and are rare because of steric hindrance

Loops
  • longer than turns, between 6 and 16 residues long
  • term used to describe 2 stranded beta-sheet
  • beta-hairpin (loop) like turns, generally polar, flexible and are often found in active sites, bin

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