Some more links from my prof ...
1. http://www.nature.com/ng/journal/v39/n7s/abs/ng2093.html
This paper is a recent reviewing defining and unifying terms. It is a must read for a good understanding the emerging structural variations.
2. http://www.nature.com/doifinder/10.1038/447161a
This paper describes a new project supported by NHGRI focusing on identifying comprehensive structural variations in humans
3. http://www.nature.com/ng/journal/v38/n12/abs/ng1921.html
This paper reported many structural variations in humans by comparing two different human genomes (public and private).
4. De novo fragment assembly with short mate-paired reads: Does the read length matter?
http://genome.cshlp.org/content/early/2009/01/13/gr.079053.108.abstract
5. De novo assembly using low-coverage short read sequence data from the rice pathogen Pseudomonas syringae pv. oryzae
http://genome.cshlp.org/content/early/2009/01/13/gr.083311.108.abstract
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