Bioinformatic Tools

http://www.bioinformatics.ca/

• CNS – molecular dynamics, structure
refinement, misc. tools
• R – Statistics Package
• MolMol – Structure viewing software
• DSSP – secondary structure assignment,
molecular surface area
• BLAST (and variations) – inside NCBI toolkit
• E-Cell – cell simulation environment
• http://sources.redhat.com/bzip2/
– bzip2 library home page – good compression
routine
– Also libz, libpng and libjpeg
• http://www.reapertech.com/index.php?id=9
– RSAEuro – encryption library
• http://www.opengl.org/
– OpenGL – excellent for 3-D graphics

Very high-level intro to J2EE
http://bioinformatics.ca/workshop_pages/dtt2004/images/pdf.gif