Regulatory variation tool performance evaluations

http://genepi_toolbox.i-med.ac.at/?page_id=1361
These issues do not allow a clear answer about the performance of each tool. We therefore report here a collection of articles, which have investigated this issue in different contexts. They provide data about the prediction quality, comparisons of different prediction tools, interesting peculiarities (such as different prediction performance for different variant types) or general discussions on this topic.

Performance of prediction tools for non-synonymous SNPs
Prediction tools for splicing regulation elements
Prediction of promoters, transcription factor binding sites and regulatory sites