Thursday, November 29, 2012

RNA-seq pipeline

http://www.bios.unc.edu/~weisun/teach/RNA-seq_pipeline.pdf

 ArrayExpressHTS R/Bioconductor based Package (EMBL)
http://www.ebi.ac.uk/Tools/rwiki/

Gene Pattern - Broad Institute (web-based), uses Cufflinks
http://www.broadinstitute.org/cancer/software/genepattern/modules/RNA-seq/

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