Diploid short read assembly

Assemblathon 1, http://www.ncbi.nlm.nih.gov/pubmed/21926179
Earl et al, Assemblathon 1: A competitive assessment of de novo short
read assembly methods. Genome Res. 2011 Sep 16. PubMed PMID: 21926179

ABySS, http://www.ncbi.nlm.nih.gov/pubmed/19251739
Simpson et al, ABySS: a parallel assembler for short read sequence data.
Genome Res. 2009. Jun;19(6):1117-23. PubMed PMID: 19251739; PubMed
Central PMCID: PMC2694472