Proteomics

Human Proteome Project (HPP)
Human Proteome Organisation (HUPO)

http://www.hupo.org/research/default.asp
http://en.wikipedia.org/wiki/Proteomics

Investigating the correspondence between transcriptomic and proteomic expression profiles using coupled cluster models
http://bioinformatics.oxfordjournals.org/content/24/24/2894

Chris Overall

http://www.clip.ubc.ca/personnel/alumni.html

Leonard Foster
http://www.chibi.ubc.ca/faculty/foster

Tools
PeptideProphet http://peptideprophet.sourceforge.net/
ProteinProphet
Sequence Logo iceLogo
Mascot (Matrix Science)
X! Tandem http://www.thegpm.org/tandem/
MSQuant is a tool for quantitative proteomics/mass spectrometry and processes spectra and LC runs to find quantitative information about proteins and peptides.
MSQuant http://msquant.sourceforge.net/