Wednesday, March 31, 2010

cancer data, plant-pathogen metabolic reconstruction

Targeted metabolic reconstruction: a novel approach for the characterization of plant–pathogen interactions
Andrés Pinzón, Luis M. Rodriguez-R, Andrés González, Adriana Bernal and Silvia Restrepo

Corresponding author. Andrés Pinzón, Laboratorio de Micología y Fitopatología, Universidad de los Andes, Bogotá, Colombia. Tel: +57 1 3394949; ext. 2777; E-mail: am.pinzon196@uniandes.edu.co

http://bib.oxfordjournals.org/cgi/content/abstract/bbq009v1?papetoc


Online resources of cancer data: barriers, benefits and lessons
Emanuela Gadaleta, Nicholas R. Lemoine and Claude Chelala

http://bib.oxfordjournals.org/cgi/content/abstract/bbq010v1?papetoc

- The Cancer Genome Atlas (TCGA) - http://cancergenome.nih.gov
- International Cancer Genome Consortium (ICGC) - http://www.icgc.org/
- BioMart - http://www.biomart.org
- Pancreatic Expression database - http://www.pancreasexpression.org
- Cancer Biomedical Informatics Grid (caBIG) - http://cabig.nci.nih.gov
- The Lymphoma Enterprise Architecture Data-system (LEAD) - http://umlmodelbrowser.nci.nih.gov/umlmodelbrowser/
- Repository of Molecular Brain Neoplasia Data (REMBRANDT) - http://rembrandt.nci.nih.gov
- ONcology Information eXchange (ONIX) - http://www.ncri-onix.org.uk
- Oncomine - http://www.oncomine.org
- ArrayExpress - http://www.ebi.ac.uk/arrayexpressas/ae
- Gene Expression Omnibus - http://www.ncbi.nlm.nih.gov/geo/

Need some link checker to see which links are still alive and dead

BioCyc SAQP - web-based SQL query interface
http://biocyc.org/query.shtml

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