Introduction to Translational Bioinformatics Collection

http://www.ploscollections.org/downloads/TranslationalBioinformatics.pdf

Editorial

Ten Simple Rules for the Open Development of Scientific Software
Andreas Prlić, James B. Procter

Education

Introduction to Translational Bioinformatics Collection
Russ B. Altman

Chapter 1: Biomedical Knowledge Integration
Philip R. O. Payne

Chapter 2: Data-Driven View of Disease Biology
Casey S. Greene, Olga G. Troyanskaya

Chapter 3: Small Molecules and Disease
David S. Wishart

Chapter 4: Protein Interactions and Disease
Mileidy W. Gonzalez, Maricel G. Kann

Chapter 5: Network Biology Approach to Complex Diseases
Dong-Yeon Cho, Yoo-Ah Kim, Teresa M. Przytycka

Chapter 6: Structural Variation and Medical Genomics
Benjamin J. Raphael

Chapter 7: Pharmacogenomics
Konrad J. Karczewski, Roxana Daneshjou, Russ B. Altman

Chapter 8: Biological Knowledge Assembly and Interpretation
Ju Han Kim

Chapter 9: Analyses Using Disease Ontologies
Nigam H. Shah, Tyler Cole, Mark A. Musen

Chapter 10: Mining Genome-Wide Genetic Markers
Xiang Zhang, Shunping Huang, Zhaojun Zhang, Wei Wang

Chapter 11: Genome-Wide Association Studies
William S. Bush, Jason H. Moore

Chapter 12: Human Microbiome Analysis
Xochitl C. Morgan, Curtis Huttenhower

Chapter 13: Mining Electronic Health Records in the Genomics Era
Joshua C. Denny

Chapter 14: Cancer Genome Analysis
Miguel Vazquez, Victor de la Torre, Alfonso Valencia

Teaching the Fundamentals of Biological Data Integration Using Classroom Games
Maria Victoria Schneider, Rafael C. Jimenez