Friday, November 28, 2014
Continuous integration servers
Jenkins
http://jenkins-ci.org/
Bamboo
https://confluence.atlassian.com/display/BAMBOO/Bamboo+Documentation+Home
Wednesday, November 26, 2014
PLOS Computational Biology: Translational Bioinformatics
http://www.ploscollections.org/article/browseIssue.action?issue=info:doi/10.1371/issue.pcol.v03.i11
PLOS Computational Biology: published 21 Feb 2013 | info:doi/10.1371/journal.pcbi.1002941
Education Articles
PLOS Computational Biology: published 27 Dec 2012 | info:doi/10.1371/journal.pcbi.1002796
PLOS Computational Biology: published 27 Dec 2012 | info:doi/10.1371/journal.pcbi.1002826
PLOS Computational Biology: published 27 Dec 2012 | info:doi/10.1371/journal.pcbi.1002816
PLOS Computational Biology: published 27 Dec 2012 | info:doi/10.1371/journal.pcbi.1002805
PLOS Computational Biology: published 27 Dec 2012 | info:doi/10.1371/journal.pcbi.1002819
PLOS Computational Biology: published 27 Dec 2012 | info:doi/10.1371/journal.pcbi.1002820
PLOS Computational Biology: published 27 Dec 2012 | info:doi/10.1371/journal.pcbi.1002821
PLOS Computational Biology: published 27 Dec 2012 | info:doi/10.1371/journal.pcbi.1002817
PLOS Computational Biology: published 27 Dec 2012 | info:doi/10.1371/journal.pcbi.1002858
PLOS Computational Biology: published 27 Dec 2012 | info:doi/10.1371/journal.pcbi.1002827
PLOS Computational Biology: published 27 Dec 2012 | info:doi/10.1371/journal.pcbi.1002828
PLOS Computational Biology: published 27 Dec 2012 | info:doi/10.1371/journal.pcbi.1002822
PLOS Computational Biology: published 27 Dec 2012 | info:doi/10.1371/journal.pcbi.1002808
PLOS Computational Biology: published 27 Dec 2012 | info:doi/10.1371/journal.pcbi.1002823
PLOS Computational Biology: published 27 Dec 2012 | info:doi/10.1371/journal.pcbi.1002824
PLOS Computational Biology: published 25 Apr 2013 | info:doi/10.1371/journal.pcbi.1002902
PLOS Computational Biology: published 25 Apr 2013 | info:doi/10.1371/journal.pcbi.1003044
PLOS Computational Biology: published 25 Apr 2013 | info:doi/10.1371/journal.pcbi.1003043
Thursday, November 20, 2014
threejs - makes WebGL - 3D in the browser - very easy
http://threejs.org/docs/index.html#Manual/Introduction/Creating_a_scene
Three.js is a library that makes WebGL - 3D in the browser - very easy. While a simple cube in raw WebGL would turn out hundreds of lines of Javascript and shader code, a Three.js equivalent is only a fraction of that.
Three.js is a library that makes WebGL - 3D in the browser - very easy. While a simple cube in raw WebGL would turn out hundreds of lines of Javascript and shader code, a Three.js equivalent is only a fraction of that.
Google Genomics
https://cloud.google.com/genomics/v1beta2/visualization
Google Genomics provides an API to store, process, explore, and share DNA sequence reads, reference-based alignments, and variant calls, using Google's cloud infrastructure.
Store alignments and variant calls for one genome or a million.
Process genomic data in batch by running principal component analysis or Hardy-Weinberg equilibrium, in minutes or hours, by using parallel computing frameworks like MapReduce.
Explore data by slicing alignments and variants by genomic range across one or multiple samples -- for your own algorithms or for visualization; or interactively process entire cohorts to find transition/transversion ratios, allelic frequency, genome-wide association and more using BigQuery.
Share genomic data with your research group, collaborators, the broader community, or the public. You decide.
Google Genomics is implementing the API defined by the Global Alliance for Genomics and Health for visualization, analysis and more. Compliant software can access Google Genomics, local servers, or any other implementation.
Cluster computing
https://spark.apache.org/downloads.html
Google BigQuery
https://cloud.google.com/bigquery/what-is-bigquery
Google Genomics provides an API to store, process, explore, and share DNA sequence reads, reference-based alignments, and variant calls, using Google's cloud infrastructure.
Store alignments and variant calls for one genome or a million.
Process genomic data in batch by running principal component analysis or Hardy-Weinberg equilibrium, in minutes or hours, by using parallel computing frameworks like MapReduce.
Explore data by slicing alignments and variants by genomic range across one or multiple samples -- for your own algorithms or for visualization; or interactively process entire cohorts to find transition/transversion ratios, allelic frequency, genome-wide association and more using BigQuery.
Share genomic data with your research group, collaborators, the broader community, or the public. You decide.
Google Genomics is implementing the API defined by the Global Alliance for Genomics and Health for visualization, analysis and more. Compliant software can access Google Genomics, local servers, or any other implementation.
Cluster computing
https://spark.apache.org/downloads.html
Google BigQuery
https://cloud.google.com/bigquery/what-is-bigquery
Thursday, November 13, 2014
10 New Breakthrough Technologies 2014
http://www.technologyreview.com/lists/technologies/2014/
Agricultural Drones
Ultraprivate Smartphones
Brain Mapping
Neuromorphic Chips
Genome Editing
Microscale 3-D Printing
Mobile Collaboration
Oculus Rift
Agile Robots
Smart Wind and Solar Power
Agricultural Drones
Ultraprivate Smartphones
Brain Mapping
Neuromorphic Chips
Genome Editing
Microscale 3-D Printing
Mobile Collaboration
Oculus Rift
Agile Robots
Smart Wind and Solar Power
Monday, November 10, 2014
Alzheimer's drug sneaks through blood–brain barrier
Neurobiologist Ryan Watts and his colleagues at the biotechnology company Genentech in South San Francisco have sought to break through the barrier by exploiting transferrin, a protein that sits on the surface of blood vessels and carries iron into the brain. The team created an antibody with two ends. One end binds loosely to transferrin and uses the protein to transport itself into the brain. And once the antibody is inside, its other end targets an enzyme called β-secretase 1 (BACE1), which produces amyloid-β. Crucially, the antibody binds more tightly to BACE1 than to transferrin, and this pulls it off the blood vessel and into the brain. It locks BACE1 shut and prevents it from making amyloid-β.
http://www.nature.com/news/alzheimer-s-drug-sneaks-through-blood-brain-barrier-1.16291
http://www.nature.com/news/alzheimer-s-drug-sneaks-through-blood-brain-barrier-1.16291
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