Tuesday, June 14, 2011

BioNLP '09 - Shared task sample

http://www-tsujii.is.s.u-tokyo.ac.jp/GENIA/SharedTask/downloads.shtml

http://bioinformatics.oxfordjournals.org/content/26/18/i554.full

SMBM - International Symposium for Semantic Mining in Biomedicine 2010
http://www.smbm.eu/provisional-program

Automatic extraction of semantic relations between medical entities:
Application to the treatment relation
Asma Ben Abacha
Pierre Zweigenbaum

To extract occurrences of
the target relations, we then design linguistic pat-
terns based on selected sentences from PubMed
Central articles. We present a method to ob-
tain such sentences by leveraging UMLS Metathe-
saurus knowledge and MeSH indexing of PubMed
Central.

RegulonDB e-coli. transcriptional regulatory network
http://regulondb.ccg.unam.mx/

Enju is a syntactic parser for English. With a wide-coverage probabilistic HPSG (Head-driven phrase structure) grammar [1-7] and an efficient parsing algorithm [8-11], this parser can effectively analyze syntactic/semantic structures of English sentences and provide a user with phrase structures and predicate-argument structures.
http://www-tsujii.is.s.u-tokyo.ac.jp/enju/

CoNLL-2010 Shared Task
Learning to detect hedges and their scope in natural language text
http://www.inf.u-szeged.hu/rgai/conll2010st/

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