Tuesday, March 16, 2010

Galaxy

Galaxy
http://galaxy.psu.edu/

Galaxy allows you to do analyses you cannot do anywhere else without the need to install or download anything. You can analyze multiple alignemnts, compare genomic annotations, profile metagenomic samples and much much more...

$ hg clone http://bitbucket.org/galaxy/galaxy-dist/

Fix this error by using virtualenv

> "/var/lib/python-support/python2.5/sqlalchemy/databases/sqlite.py",
> line 343, in reflecttable
> >> raise
> exceptions.NoSuchTableError(table.name)
> >> NoSuchTableError: migrate_version

http://pypi.python.org/pypi/virtualenv

$ virtualenv --not-site-packages ENV
$ export PATH=$HOME/ENV/bin:$PATH
$ ./run.sh

point your browser to
http://127.0.0.1:8080
http://localhost:8080/

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